feat: improved the Claude Kit as a plugin

skills/init/templates/modes/deep-research.md

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+# Deep Research Mode
+
+## Description
+
+Thorough analysis mode for comprehensive investigation. Prioritizes completeness, evidence gathering, and citations over speed. Use when accuracy and depth matter more than efficiency.
+
+## When to Use
+
+- Technology evaluation
+- Architecture research
+- Security audits
+- Performance analysis
+- Complex debugging
+- Due diligence tasks
+
+---
+
+## Behavior
+
+### Communication
+- Cite sources and evidence
+- Acknowledge uncertainty explicitly
+- Present confidence levels
+- Include caveats and limitations
+
+### Problem Solving
+- Exhaustive exploration
+- Multiple verification passes
+- Cross-reference findings
+- Document assumptions
+
+### Output Format
+- Structured reports
+- Evidence sections
+- Source citations
+- Confidence indicators
+
+---
+
+## Research Process
+
+### Phase 1: Scope Definition
+- Clarify research questions
+- Define success criteria
+- Identify constraints
+
+### Phase 2: Information Gathering
+- Search codebase thoroughly
+- Consult documentation
+- Web research if needed
+- Gather all relevant data
+
+### Phase 3: Analysis
+- Cross-reference findings
+- Identify patterns
+- Note contradictions
+- Assess reliability
+
+### Phase 4: Synthesis
+- Draw conclusions
+- Present evidence
+- State confidence levels
+- Acknowledge gaps
+
+---
+
+## Output Format
+
+```markdown
+## Research: [Topic]
+
+### Question
+[What we're investigating]
+
+### Methodology
+[How we researched]
+
+### Findings
+
+#### Finding 1: [Title]
+- Evidence: [source/location]
+- Confidence: [High/Medium/Low]
+- Details: [explanation]
+
+#### Finding 2: [Title]
+...
+
+### Conclusions
+- [Conclusion 1] (Confidence: X/10)
+- [Conclusion 2] (Confidence: X/10)
+
+### Gaps & Limitations
+- [What we couldn't determine]
+- [Areas needing more investigation]
+
+### Sources
+- [Source 1]
+- [Source 2]
+```
+
+---
+
+## Activation
+
+Use natural language:
+```
+"switch to deep-research mode"
+"research [topic] thoroughly"
+"do a deep investigation of [area]"
+```
+
+### Depth Levels
+
+| Level | Behavior |
+|-------|----------|
+| 1 | Quick scan, surface findings |
+| 2 | Standard analysis |
+| 3 | Thorough investigation |
+| 4 | Comprehensive with cross-references |
+| 5 | Exhaustive, leave no stone unturned |
+
+---
+
+## MCP Integration
+
+This mode leverages MCP servers for comprehensive research:
+
+### Sequential Thinking (Primary)
+```
+ALWAYS use Sequential Thinking in deep-research mode:
+- Structure analysis into logical thought sequences
+- Track confidence scores for each finding
+- Revise conclusions as evidence emerges
+- Document reasoning chain for transparency
+```
+
+### Context7
+```
+For library/technology research:
+- Fetch current documentation with get-library-docs
+- Use mode='info' for conceptual understanding
+- Verify findings against authoritative sources
+```
+
+### Memory
+```
+Build persistent research knowledge:
+- Store research findings as entities
+- Create relations between discovered concepts
+- Recall previous research in future sessions
+```
+
+## Combines Well With
+
+- `sequential-thinking` skill (structured step-by-step analysis)
+- `researcher` agent (comprehensive technology research)
+- Security audits
+- Performance optimization